N-Fmoc-N-(cyanomethyl)-glycine

Isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1)·TFA is a short peptidomimetic featuring N-methyl and noncanonical residues that impose rigid conformations. The isobutyryl cap and aromatic Phg unit tune hydrophobic character and steric bulk. Researchers explore its binding to structured protein pockets and enzymatic resistance. Applications include lead-scaffold development, conformational analysis, and structure-activity studies.

Designed for biological research and industrial applications, not intended for individual clinical or medical purposes.
N-Fmoc-N-(cyanomethyl)-glycine(CAS 2097887-21-1)

CAT No: R2371

CAS No:2097887-21-1

Synonyms/Alias:isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA;MM-589 TFA;2097887-21-1;MM-589 (TFA);XID88721;DA-65552;N-{6-ethyl-12-methyl-9-[3-(N'-methylcarbamimidamido)propyl]-2,5,8,11-tetraoxo-3-phenyl-1,4,7,10-tetraazacyclotetradecan-12-yl}-2-methylpropanamide; trifluoroacetic acid;

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M.F/Formula
C30H45F3N8O7
M.W/Mr.
686.7
Sequence
Three Letter Code:isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA

Isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA is a synthetic carbohydrate-peptide hybrid compound that stands at the intersection of innovative peptide chemistry and carbohydrate research. Characterized by its unique structural motifs, this molecule incorporates isobutyryl and methylated amino acid residues, offering enhanced stability and novel physicochemical properties compared to conventional peptides. The presence of both D- and L- stereoisomers, along with non-canonical amino acids such as aMeDab and Phg, further diversifies its conformational landscape, making it a valuable tool for researchers exploring structure-activity relationships and molecular recognition phenomena. Its TFA salt form ensures improved solubility and handling in laboratory settings, facilitating seamless integration into a variety of experimental workflows. As a result, isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA is gaining traction across multiple scientific disciplines, where it serves as a versatile building block for advanced research and development initiatives.

Peptide Synthesis Research: In peptide synthesis research, this compound is employed as a model substrate for studying the impact of non-standard amino acid incorporation on peptide folding, stability, and function. Its methylated and isobutyryl-modified residues allow scientists to probe steric and electronic effects within peptide chains, providing insights that can inform the design of more robust and bioactive analogs. By integrating such hybrid structures into synthetic sequences, researchers can systematically investigate how modifications influence conformational preferences and intermolecular interactions, which is crucial for advancing peptide engineering strategies.

Enzyme Substrate Studies: As an enzyme substrate, isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA is utilized to assess the specificity and catalytic mechanisms of proteases, peptidases, and other peptide-processing enzymes. Its inclusion of both natural and non-natural residues creates a challenging substrate profile, enabling the detailed evaluation of enzyme selectivity and activity. These studies are instrumental in identifying novel enzymatic pathways and in developing inhibitors or modulators that target specific enzymatic functions, thereby expanding the toolkit available for biochemical investigation.

Molecular Recognition and Binding Assays: The unique configuration of this peptide-carbohydrate hybrid makes it an excellent probe in molecular recognition and binding assays. Researchers leverage its distinct side-chain functionalities and stereochemistry to study how proteins, antibodies, or receptors discriminate among structurally diverse ligands. Such assays help elucidate the principles underlying molecular recognition events, which are fundamental to drug discovery, biomarker identification, and the development of diagnostic reagents.

Structural Biology and Spectroscopy: Isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA is also valuable in structural biology and spectroscopy applications. Its non-standard residues and hybrid backbone offer a distinctive system for NMR, circular dichroism, and X-ray crystallography studies aimed at mapping three-dimensional structures and dynamic behaviors. These investigations provide high-resolution data on backbone flexibility, side-chain orientations, and the effects of chemical modifications, all of which are critical for understanding the relationship between structure and function in synthetic peptides.

Combinatorial Library Development: In the field of combinatorial chemistry, this compound serves as a scaffold for constructing diverse peptide libraries. By incorporating it into solid-phase synthesis protocols, chemists can generate arrays of analogs with systematic variations in sequence and modification pattern. These libraries are screened for desirable properties such as binding affinity, stability, or biological activity, accelerating the discovery of lead compounds and functional materials for research applications.

Across all these domains, isobutyryl-DL-aMeDab(1)-DL-Arg(Me)-DL-Abu-DL-Phg-(1).TFA demonstrates significant utility as a multifunctional research tool. Its hybrid nature, chemical versatility, and compatibility with a range of analytical and synthetic techniques make it an asset in the exploration of peptide structure, enzymatic function, molecular recognition, and combinatorial innovation. By enabling the systematic study of non-canonical modifications and their effects, this compound supports the advancement of peptide science and the development of next-generation biomolecular technologies.

InChI
InChI=1S/C28H44N8O5.C2HF3O2/c1-6-19-23(38)35-21(18-11-8-7-9-12-18)25(40)31-16-14-28(4,36-22(37)17(2)3)26(41)34-20(24(39)33-19)13-10-15-32-27(29)30-5;3-2(4,5)1(6)7/h7-9,11-12,17,19-21H,6,10,13-16H2,1-5H3,(H,31,40)(H,33,39)(H,34,41)(H,35,38)(H,36,37)(H3,29,30,32);(H,6,7)
InChI Key
NARXNZHWAWPJIY-UHFFFAOYSA-N

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