Boc-Thr(Val-Fmoc)-OH is a protected amino acid derivative featuring a threonine scaffold bearing an additional valine side-chain substituent and an Fmoc group, with the α-amino functionality masked as a Boc (tert-butoxycarbonyl) carbamate and the carboxyl group present as a free acid. The molecule contains multiple protected and unprotected functional groups, including the Boc-protected amino group, an Fmoc-protected moiety on the appended valine unit, and an unprotected carboxylic acid for further coupling chemistry, while the threonine side chain includes the characteristic hydroxyl functionality that is substituted by the valine/Fmoc fragment as indicated by the name. In peptide synthesis workflows, this type of orthogonally protected, side-chain-substituted amino acid building block is used to control chemoselectivity during stepwise assembly and to introduce a defined threonine-valine structural motif into peptide-related intermediates.
CAT No: CP27565
CAS No:887707-95-1
Synonyms/Alias:Boc-Thr(Fmoc-Val)-OH;ZINC71788189;AKOS025289500;AK170264;N-(tert-Butoxycarbonyl)-O-[N-(9H-fluorene-9-ylmethoxycarbonyl)-L-valyl]-L-threonine;887707-95-1
Boc-Thr(Val-Fmoc)-OH is a protected threonine derivative in which the amino functionality is carbamate-protected as Boc, while the side-chain hydroxyl remains available for controlled chemistry and the molecule bears an additional Val-Fmoc substituent that introduces a second stereodefined amino-acid element and an Fmoc-protected aromatic fluorene motif. The presence of both Boc and Fmoc protecting groups enables orthogonal deprotection strategies that separate N-terminal activation from subsequent peptide-coupling steps. The ester-free carboxylic acid provides a handle for peptide bond formation and for conversion into activated intermediates, while the threonine β-oxygen and valine-derived carbon skeleton support downstream derivatization and stereochemically defined scaffold assembly. This structure functions as a chiral, multifunctional amino-acid-based intermediate suited for peptide building block preparation, peptidomimetic construction, and protected amino acid synthesis workflows where sequential protection and coupling are required.
1. Peptide Synthesis
Boc-Thr(Val-Fmoc)-OH is applied in peptide synthesis workflows that require orthogonal N-protection and sequential coupling control, particularly when assembling fragments that contain both threonine and valine-derived stereocenters. The Boc-protected amino group supports controlled activation for amide bond formation, while the Fmoc group on the Val segment can be removed under base conditions to reveal a protected amine for subsequent coupling without disturbing the Boc carbamate. The free carboxylic acid enables standard peptide coupling chemistry to connect the threonine-containing residue to upstream or downstream peptide segments, supporting C-terminal modification strategies in protected amino acid chemistry. Downstream peptide analogs prepared from this intermediate can incorporate defined side-chain geometry and protected functional groups for iterative chain elongation. The compound therefore serves as a structurally encoded peptide building block for constructing stereodefined oligomers used in biochemical research and synthetic methodology development.
2. Peptidomimetics And SAR Studies
Boc-Thr(Val-Fmoc)-OH supports peptidomimetic construction and structure-activity relationship studies by enabling incorporation of a threonine backbone element with a valine-derived Fmoc-protected segment into constrained peptide-like scaffolds. The threonine side-chain hydroxyl-bearing stereocenter can be retained for selective functional group transformation or protected further to tune hydrogen-bonding and polarity in analog series. The dual protecting-group pattern allows stepwise generation of defined amide linkages and controlled exposure of amines during scaffold diversification, which is relevant when preparing libraries of analogs for SAR studies. The resulting derivatives can be used to probe how stereochemistry and side-chain functionality influence molecular recognition, while the protected carboxylate-to-amide conversion supports systematic variation of chain length and substitution patterns. This intermediate aligns with amino acid derivatization and peptide analog synthesis strategies used in research-grade medicinal chemistry and molecular design.
3. Chemical Biology Conjugation
Boc-Thr(Val-Fmoc)-OH is suitable for chemical biology and biomolecule modification routes that rely on protected amino acid intermediates to introduce defined stereochemical motifs into functional conjugates. The Fmoc-protected amine and Boc-protected carbamate provide a controlled sequence for generating reactive coupling sites, enabling attachment of the threonine/valine motif to carrier proteins, linkers, or labeling handles after selective deprotection. The presence of a threonine hydroxyl-bearing side chain supports downstream functionalization to install conjugation-ready groups such as activated esters, ether-linked handles, or other oxygen-reactive motifs while maintaining stereochemical fidelity. The carboxylic acid functionality can be converted into activated derivatives for amide bond formation with amine-bearing biomolecular targets or linker scaffolds. This makes the compound useful in constructing defined conjugation building blocks for biochemical research intermediate preparation and targeted molecular labeling strategies.
4. Pharmaceutical Manufacturing Intermediates
Boc-Thr(Val-Fmoc)-OH can be employed in pharmaceutical manufacturing and process chemistry contexts as a protected amino acid intermediate for producing peptide-containing or peptide-derived materials under controlled protection and coupling sequences. The orthogonal Boc/Fmoc protection pattern supports manufacturing-compatible stepwise processing, where selective deprotection and subsequent peptide coupling reduce cross-reactivity between functional groups. The free carboxylic acid and protected amine arrangement facilitate conversion into activated coupling partners and controlled formation of peptide bonds during fragment assembly. The stereodefined threonine and valine-derived elements help maintain structural consistency across manufacturing batches where chiral integrity and defined connectivity are required for downstream material performance. The compound thus fits industrial fine chemical synthesis workflows that depend on robust amino acid derivative handling and predictable deprotection/coupling behavior.
5. Analytical Research Standards
Boc-Thr(Val-Fmoc)-OH is applicable to analytical research and method development where protected amino acid derivatives serve as reference materials for monitoring deprotection, coupling progression, and impurity profiles in peptide synthesis. The distinct Boc and Fmoc protecting-group signatures provide chromatographic and spectroscopic markers that can be tracked to verify orthogonal deprotection sequences and to assess residual protecting-group carryover. The presence of both threonine and valine stereochemical elements supports the use of this intermediate in establishing retention-time libraries and mass-based identification for complex peptide-building block mixtures. The carboxylic acid functionality and protected amine enable derivatization into analytical standards or calibration compounds that reflect downstream peptide coupling states. This intermediate therefore supports QA/QC-oriented analytical workflows in peptide chemistry, including stability studies of protected amino acid intermediates and characterization of synthetic intermediates.
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