Bombinin

Bombinin presents an amphipathic peptide motif widely explored for membrane-interaction modeling. Hydrophobic regions promote helical transitions in lipid environments. Researchers assess its conformational dynamics and binding equilibria. Applications span natural-peptide mimetics, structural biophysics, and sequence-activity investigation.

Designed for biological research and industrial applications, not intended for individual clinical or medical purposes.
Bombinin(CAS 138657-70-2)

CAT No: R2654

CAS No:138657-70-2

Synonyms/Alias:Bombinin;EX-A9799;138657-70-2;

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M.F/Formula
C114H192N34O32
M.W/Mr.
2551
Sequence
One Letter Code:GIGGALLSAGKSALKGLAKGLAEHFAN
Three Letter Code:H-Gly-Ile-Gly-Gly-Ala-Leu-Leu-Ser-Ala-Gly-Lys-Ser-Ala-Leu-Lys-Gly-Leu-Ala-Lys-Gly-Leu-Ala-Glu-His-Phe-Ala-Asn-NH2

Bombinin is a naturally occurring antimicrobial peptide originally isolated from the skin secretions of certain Bombina frog species. As a member of the host-defense peptide family, Bombinin is characterized by its amphipathic structure and potent membrane-disruptive properties, which contribute to its broad-spectrum activity against various microorganisms. Its unique sequence and secondary structure have made it a subject of significant interest in peptide biochemistry, membrane biology, and innate immunity research. The compound's ability to interact with lipid bilayers and modulate microbial viability underpins its value as a model system for exploring peptide-membrane interactions and innate defense mechanisms.

Antimicrobial research: Bombinin serves as a valuable tool for investigating the mechanisms of antimicrobial peptides in neutralizing bacterial and fungal pathogens. Researchers utilize it to study how amphipathic peptides interact with microbial membranes, leading to permeabilization and cell death. These studies provide fundamental insights into the structural features and physicochemical parameters governing peptide selectivity and potency, contributing to the rational design of novel antimicrobial agents and the broader understanding of innate immune defenses.

Membrane biophysics: The peptide's defined sequence and conformational behavior make it an excellent probe for biophysical studies of membrane structure and dynamics. By incorporating Bombinin into model lipid bilayers or vesicle systems, scientists can examine peptide-induced membrane disruption, pore formation, and lipid phase transitions. Such investigations help elucidate the fundamental principles of membrane-active peptides, inform the development of synthetic analogs, and advance the field of peptide-lipid interactions.

Peptide engineering: Bombinin's well-characterized sequence provides a robust template for the design and synthesis of analogs with tailored physicochemical properties. Researchers employ site-directed mutagenesis and sequence modification strategies to generate variants with altered antimicrobial spectra, enhanced stability, or reduced cytotoxicity. These engineered peptides are then assessed for structure-activity relationships, supporting the optimization of functional properties for research and potential biotechnological applications.

Innate immunity studies: As a representative of amphibian host-defense peptides, Bombinin is frequently used to model the evolutionary adaptation of innate immune systems. Comparative studies involving this peptide and related molecules shed light on the diversification of antimicrobial strategies across species. Such research enables a deeper understanding of how peptide-based defenses have evolved in response to environmental pressures and pathogenic challenges, offering a platform for studying the molecular evolution of immunity.

Analytical method development: The distinct physicochemical characteristics of Bombinin, including its charge distribution and hydrophobicity, make it a useful standard for the development and validation of analytical techniques. Techniques such as high-performance liquid chromatography (HPLC), mass spectrometry, and circular dichroism spectroscopy benefit from the use of well-defined peptides like Bombinin for method calibration, optimization, and the assessment of peptide purity and conformation. This facilitates reliable analysis in peptide research and quality control settings.

InChI
InChI=1S/C114H192N34O32/c1-19-62(12)93(148-86(152)47-118)114(180)126-49-87(153)122-50-88(154)128-64(14)96(162)141-79(42-60(8)9)109(175)143-80(43-61(10)11)110(176)147-84(55-150)112(178)129-63(13)95(161)123-51-89(155)134-73(33-25-28-38-117)103(169)146-83(54-149)113(179)133-68(18)100(166)142-78(41-59(6)7)108(174)139-72(32-24-27-37-116)102(168)125-53-91(157)136-76(39-57(2)3)105(171)130-65(15)97(163)137-71(31-23-26-36-115)101(167)124-52-90(156)135-77(40-58(4)5)106(172)131-66(16)98(164)138-74(34-35-92(158)159)104(170)145-82(45-70-48-121-56-127-70)111(177)144-81(44-69-29-21-20-22-30-69)107(173)132-67(17)99(165)140-75(94(120)160)46-85(119)151/h20-22,29-30,48,56-68,71-84,93,149-150H,19,23-28,31-47,49-55,115-118H2,1-18H3,(H2,119,151)(H2,120,160)(H,121,127)(H,122,153)(H,123,161)(H,124,167)(H,125,168)(H,126,180)(H,128,154)(H,129,178)(H,130,171)(H,131,172)(H,132,173)(H,133,179)(H,134,155)(H,135,156)(H,136,157)(H,137,163)(H,138,164)(H,139,174)(H,140,165)(H,141,162)(H,142,166)(H,143,175)(H,144,177)(H,145,170)(H,146,169)(H,147,176)(H,148,152)(H,158,159)/t62-,63-,64-,65-,66-,67-,68-,71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,93-/m0/s1
InChI Key
DYCNTUANSWQVQY-VCUXQJNTSA-N

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