Fmoc-L-Ile-CHN2

Fmoc-L-Ile-CHN2 contains an L-isoleucine backbone bearing a side-chain characteristic of isoleucine and an N-terminal 9-fluorenylmethoxycarbonyl (Fmoc) protecting group, classifying it as a protected amino acid derivative for peptide chemistry. The molecule presents a carboxyl functional group as a carboxamide (-CHN2) at the C-terminus, with the amino acid α-amino functionality protected by the Fmoc carbamate and the terminal diazomethyl (-CHN2) moiety providing a diazo functional handle for chemical transformations. In synthesis workflows, Fmoc-L-Ile-CHN2 is employed as a stepwise building block in protected-amino-acid coupling strategies and as a diazo-containing intermediate to access more complex amino acid and peptide derivatives for chemical biology, labeling, and structure-function studies.

Designed for biological research and industrial applications, not intended for individual clinical or medical purposes.

CAT No: CP25685

CAS No:266359-44-8

Synonyms/Alias:266359-44-8;AmbotzFAA1596;MolPort-008-267-692;N-alpha-(9-Fluorenylmethyloxycarbonyl)-L-isoleucinyl-diazomethane

Chemical Name:N-alpha-(9-Fluorenylmethyloxycarbonyl)-L-isoleucinyl-diazomethane, (3S,4S)-3-Fmoc-amino-1-diazo-4-methyl-2-hexanone

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M.F/Formula
C22H23N3O3
M.W/Mr.
377,45 g/mole

Fmoc-L-Ile-CHN2 is an Fmoc-protected L-isoleucine derivative bearing a terminal diazomethyl functionality (CHN2) that functions as a reactive, stereochemically defined side-chain-modified amino acid building block. The molecule retains the chiral center of L-isoleucine and presents an N-Fmoc carbamate for base-stable handling during peptide assembly, while the diazo group introduces a controllable carbene precursor for downstream C-C and C-heteroatom bond formation. The isoleucine side chain provides hydrophobic steric features that can influence peptide conformation and reactivity during coupling and post-assembly transformations. The diazomethyl group can participate in synthetic derivatization under appropriate conditions, enabling conversion into functionalized motifs while preserving the peptide-compatible backbone protected by Fmoc.

1. Peptide Synthesis

Fmoc-L-Ile-CHN2 is suitable for solid-phase peptide synthesis workflows where the N-Fmoc group supports iterative deprotection and coupling cycles without exposing the amino acid nitrogen prematurely. The protected amino acid format, together with the L-configuration, enables incorporation as a defined residue within peptide sequences, while the diazomethyl side-chain functionality can be carried through assembly for later on-resin or post-cleavage transformations. The isoleucine side chain contributes hydrophobic packing that can affect peptide folding propensity and reactivity accessibility of the diazo handle. The resulting diazo-bearing peptides serve as precursors for generating peptide analogs and post-synthetic modifications that expand peptide library diversity.

2. Peptidomimetics Construction

Fmoc-L-Ile-CHN2 is applied in peptidomimetic and scaffold-building strategies that use diazo chemistry to introduce new carbon frameworks onto amino acid-derived backbones. The diazomethyl (CHN2) group can be converted into carbene-derived products, enabling installation of substituents that mimic or diversify side-chain topology relative to native isoleucine. The Fmoc-protected amino acid architecture supports controlled assembly of fragments, allowing stereodefined incorporation of the L-isoleucine core before diazo conversion. Downstream, diazo-derived transformations can generate constrained or functionalized peptide-like structures used in molecular design and synthetic methodology development.

3. Chemical Biology Labeling

Fmoc-L-Ile-CHN2 is relevant to chemical biology research that requires site-specific functionalization of peptides or biomolecule conjugates using diazo-based reactive intermediates. The compound's amino acid backbone protection strategy (Fmoc carbamate) allows preparation of diazo-functional peptide building blocks that can be coupled to targeting sequences or carrier proteins under peptide-compatible conditions. The diazomethyl functionality provides a handle for selective derivatization to introduce new linkages, enabling construction of labeled probes for studying biomolecular interactions. The L-isoleucine stereochemical fidelity helps maintain defined spatial presentation of the reactive handle in the resulting conjugates.

4. SAR Studies

Fmoc-L-Ile-CHN2 is utilized in structure-activity relationship studies where systematic side-chain diversification is needed on an amino acid-derived scaffold. The diazomethyl substituent enables rapid generation of analog series through carbene precursor transformations, while the isoleucine-derived hydrophobic context helps maintain comparable steric and electronic environments across analogs. The Fmoc-protected format supports consistent peptide coupling chemistry, helping researchers access multiple derivatives that differ primarily at the diazo-derived modification site. The resulting analogs can be used to map how side-chain geometry and newly installed functional groups influence molecular recognition in SAR workflows.

5. Process Chemistry Intermediate

Fmoc-L-Ile-CHN2 can serve as a process chemistry intermediate for manufacturing routes that require a chiral, Fmoc-protected amino acid precursor bearing a controlled diazo functionality. The combination of a base-labile Fmoc protecting group and a diazo handle allows staged processing, where peptide assembly compatibility is maintained until planned conversion to diazo-derived products. The L-isoleucine stereocenter and protected amino acid format support reproducible feedstock preparation for downstream derivatization steps in fine chemical synthesis. The compound can be employed to produce diazo-functional peptides and peptide fragments used as intermediates for specialty chemical production and applied peptide chemistry supply chains.

Size
1 g;
InChI
1S/C22H23N3O3/c1-3-14(2)21(20(26)12-24-23)25-22(27)28-13-19-17-10-6-4-8-15(17)16-9-5-7-11-18(16)19/h4-12,14,19,21H,3,13H2,1-2H3,(H-,25,26,27)/b20-12-/t14-,21-/m0/s1
InChI Key
BKWBBKQNXZPCPB-WLRAFUTGSA-N
Canonical SMILES
CCC(C)C(C(=C[N+]#N)[O-])NC(=O)OCC1C2=CC=CC=C2C3=CC=CC=C13

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