D-3

D-3 is a small peptide analog containing both aromatic and polar residues that produce a versatile conformational landscape. Researchers apply it to study ligand-protein interfaces, hydrogen-bond networks, and solvent-induced structural change. Its compactness aids mechanistic and spectroscopic assays.

Designed for biological research and industrial applications, not intended for individual clinical or medical purposes.
D-3(CAS 1967815-98-0)

CAT No: R2418

CAS No:1967815-98-0

Synonyms/Alias:D-3;1967815-98-0;HY-P2286;AKOS040757176;DA-52279;CS-0124045;G18047;(2R)-2-[[(2R)-2-[[(2R)-2-[[(2R)-2-[(2-naphthalen-2-ylacetyl)amino]-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-3-(4-phosphonooxyphenyl)propanoic acid;

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M.F/Formula
C48H47N4O10P
M.W/Mr.
870.9
Sequence
One Letter Code:FFFX

D-3 is a synthetic peptide compound recognized for its unique sequence and bioactive properties, making it a valuable tool in the field of biochemical and biomedical research. As a member of the peptide class, D-3 is designed to mimic, modulate, or disrupt specific protein-protein interactions, enabling researchers to investigate signaling pathways, molecular recognition events, and cellular responses. Its defined structure and chemical stability allow for precise experimental manipulation, supporting a wide range of studies in molecular biology, pharmacology, and biochemistry. Due to its versatility, D-3 is frequently employed in research settings that require reliable and reproducible peptide reagents.

Peptide-based signaling studies: D-3 serves as an important molecular probe for dissecting complex signaling cascades in cells. By introducing this peptide into in vitro or cell-based assays, researchers can observe changes in downstream signaling events, assess receptor activation, or elucidate mechanisms of peptide-mediated communication. Its application is particularly relevant in mapping the roles of short peptide sequences in cellular processes such as proliferation, differentiation, and apoptosis, providing insights into fundamental biological regulation.

Protein interaction assays: The defined sequence of D-3 enables its use in studies aimed at characterizing protein-peptide interactions. Techniques such as surface plasmon resonance, pull-down assays, or co-immunoprecipitation can utilize this compound to identify binding partners, quantify affinities, and determine specificity within complex proteomes. These applications are essential for unraveling the molecular basis of recognition events that underlie signal transduction, enzyme regulation, and scaffold assembly in various biological systems.

Peptide synthesis and method validation: D-3 is frequently used as a reference or model peptide in the optimization and validation of synthetic methodologies. Its well-characterized properties make it suitable for benchmarking solid-phase peptide synthesis protocols, evaluating coupling efficiencies, and troubleshooting purification strategies. Analytical laboratories and peptide production facilities benefit from incorporating this compound into their quality control workflows to ensure consistent manufacturing outcomes and reliable analytical performance.

Structure-activity relationship investigations: By employing D-3 in systematic modification studies, researchers can explore how alterations in peptide sequence or conformation influence biological activity. Such investigations are crucial for understanding the determinants of peptide function, guiding the design of novel analogs, and informing the development of peptide-based modulators or inhibitors. These studies contribute to the broader field of chemical biology, where elucidating structure-activity relationships is foundational for rational molecular design.

Biochemical assay development: D-3 can be incorporated into a variety of biochemical assays as a standard, substrate, or competitor, depending on the experimental objective. Its consistent behavior and defined characteristics facilitate the calibration of assay systems, the evaluation of enzyme specificity, and the assessment of detection sensitivity. This versatility supports the development of robust and reproducible assays for high-throughput screening, mechanistic studies, and functional analysis in both academic and industrial research environments.

InChI
InChI=1S/C48H47N4O10P/c53-44(31-36-20-23-37-18-10-11-19-38(37)26-36)49-40(27-32-12-4-1-5-13-32)45(54)50-41(28-33-14-6-2-7-15-33)46(55)51-42(29-34-16-8-3-9-17-34)47(56)52-43(48(57)58)30-35-21-24-39(25-22-35)62-63(59,60)61/h1-26,40-43H,27-31H2,(H,49,53)(H,50,54)(H,51,55)(H,52,56)(H,57,58)(H2,59,60,61)/t40-,41-,42-,43-/m1/s1
InChI Key
VSVONENCEIBGNL-MRWFHJSOSA-N

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