PD080645

PD080645 provides a peptide-inspired scaffold equipped with functional moieties for probing protein-ligand interactions. Hydrophobic and polar elements control conformational stability. Researchers examine its affinity profiles and structural transitions. Uses include ligand-screening studies, mechanistic modeling, and peptide-derived structure design.

Designed for biological research and industrial applications, not intended for individual clinical or medical purposes.
PD080645(CAS 398001-88-2)

CAT No: R2705

CAS No:398001-88-2

Synonyms/Alias:398001-88-2;PD080645;

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M.F/Formula
C196H340F3N63O56S
M.W/Mr.
4564
Sequence
One Letter Code:IVLSLDVPIGLLQILLEQARARAAREQATTNARILARVGHC
Three Letter Code:H-Ile-Val-Leu-Ser-Leu-Asp-Val-Pro-Ile-Gly-Leu-Leu-Gln-Ile-Leu-Leu-Glu-Gln-Ala-Arg-Ala-Arg-Ala-Ala-Arg-Glu-Gln-Ala-Thr-Thr-Asn-Ala-Arg-Ile-Leu-Ala-Arg-Val-Gly-His-Cys-NH2.TFA

PD080645 is a synthetic carbohydrate compound recognized for its unique ability to modulate glycobiological processes and influence cellular signaling pathways. Characterized by its structural specificity, PD080645 is widely utilized in biochemical research for its potent activity in carbohydrate-mediated interactions. Its molecular design enables selective engagement with glycan-binding proteins, making it an invaluable tool for probing complex biological mechanisms. Researchers value its stability and versatility, which allow for a broad range of experimental applications in both in vitro and in vivo systems. The compound's compatibility with various analytical techniques further enhances its utility across multiple scientific disciplines, driving advancements in glycoscience, molecular biology, and related fields.

Glycosylation Studies: PD080645 serves as a powerful probe in the investigation of glycosylation patterns within proteins and lipids. By incorporating this compound into experimental assays, researchers can dissect the role of specific carbohydrate moieties in post-translational modifications. Its ability to mimic or compete with natural glycans enables the elucidation of glycan-dependent protein folding, trafficking, and stability. Such studies are vital for understanding the molecular underpinnings of diseases linked to aberrant glycosylation and for identifying potential targets for therapeutic intervention.

Cell Signaling Pathway Analysis: In the context of cell signaling, PD080645 is frequently used to modulate glycan-mediated interactions on the cell surface. Its presence can either inhibit or enhance the binding of endogenous ligands to glycoprotein receptors, thereby altering downstream signaling cascades. Researchers employ this compound to delineate the contributions of carbohydrate structures to processes such as cell adhesion, migration, and immune recognition. By selectively interfering with specific signaling events, PD080645 aids in mapping the functional landscape of glycan-dependent cellular communication.

Lectin Binding Assays: The compound's high affinity for certain lectins makes it an essential reagent in lectin binding studies. Scientists utilize PD080645 to characterize the specificity and strength of lectin-carbohydrate interactions, which are fundamental to cell-cell recognition and pathogen-host interactions. By serving as a competitive inhibitor or a binding substrate, it allows for the quantitative assessment of lectin activity and the identification of novel glycan-binding proteins. These insights contribute to the broader understanding of cellular recognition mechanisms and the development of targeted glycomimetic agents.

Enzyme Inhibition Research: PD080645 is also employed in the study of carbohydrate-processing enzymes, such as glycosidases and glycosyltransferases. Its structural resemblance to natural substrates enables it to act as an inhibitor or modulator in enzyme assays. By observing changes in enzymatic activity in the presence of this compound, researchers can determine enzyme specificity, catalytic mechanisms, and potential regulatory sites. This application is particularly valuable for the discovery of new inhibitors that may be used in fundamental research or as molecular tools in glycobiology.

Drug Discovery and Development: The compound's distinctive carbohydrate structure has prompted its integration into early-stage drug discovery pipelines. PD080645 is used to screen for interactions with biologically relevant proteins, aiding in the identification of lead compounds with glycan-mediated activity. Its role as a molecular probe facilitates the rational design of glycomimetic drugs and the optimization of candidate molecules for improved efficacy and selectivity. Through these efforts, the compound supports the advancement of novel therapeutic strategies that target carbohydrate-protein interactions implicated in various pathological conditions.

Biomarker Identification: In addition to its established research applications, PD080645 is increasingly utilized in the identification and validation of glycan-based biomarkers. By selectively binding to or competing with endogenous glycans, the compound enables the detection of disease-associated glycosylation changes in biological samples. This application is instrumental in the development of diagnostic assays and the monitoring of disease progression. Through its multifaceted utility, PD080645 continues to drive innovation in carbohydrate research and supports the exploration of glycosylation as a fundamental biological phenomenon.

InChI
InChI=1S/C194H339N63O54S.C2HF3O2/c1-38-96(25)142(199)181(303)250-144(94(21)22)184(306)243-126(76-92(17)18)176(298)247-130(83-258)179(301)241-124(74-90(13)14)174(296)242-129(79-141(271)272)178(300)251-145(95(23)24)189(311)257-69-47-53-132(257)180(302)254-146(97(26)39-2)183(305)218-82-137(265)227-120(70-86(5)6)171(293)239-122(72-88(9)10)172(294)237-117(56-61-135(197)263)168(290)253-148(99(28)41-4)186(308)245-125(75-91(15)16)175(297)240-123(73-89(11)12)173(295)238-119(58-63-140(269)270)165(287)235-115(54-59-133(195)261)161(283)223-103(32)155(277)230-111(49-43-65-213-191(203)204)160(282)222-102(31)154(276)229-110(48-42-64-212-190(201)202)159(281)221-100(29)152(274)220-101(30)153(275)231-112(50-44-66-214-192(205)206)163(285)236-118(57-62-139(267)268)164(286)234-116(55-60-134(196)262)162(284)224-106(35)158(280)255-150(108(37)260)188(310)256-149(107(36)259)187(309)246-128(78-136(198)264)170(292)226-105(34)157(279)233-114(52-46-68-216-194(209)210)167(289)252-147(98(27)40-3)185(307)244-121(71-87(7)8)169(291)225-104(33)156(278)232-113(51-45-67-215-193(207)208)166(288)249-143(93(19)20)182(304)217-81-138(266)228-127(77-109-80-211-85-219-109)177(299)248-131(84-312)151(200)273;3-2(4,5)1(6)7/h80,85-108,110-132,142-150,258-260,312H,38-79,81-84,199H2,1-37H3,(H2,195,261)(H2,196,262)(H2,197,263)(H2,198,264)(H2,200,273)(H,211,219)(H,217,304)(H,218,305)(H,220,274)(H,221,281)(H,222,282)(H,223,283)(H,224,284)(H,225,291)(H,226,292)(H,227,265)(H,228,266)(H,229,276)(H,230,277)(H,231,275)(H,232,278)(H,233,279)(H,234,286)(H,235,287)(H,236,285)(H,237,294)(H,238,295)(H,239,293)(H,240,297)(H,241,301)(H,242,296)(H,243,306)(H,244,307)(H,245,308)(H,246,309)(H,247,298)(H,248,299)(H,249,288)(H,250,303)(H,251,300)(H,252,289)(H,253,290)(H,254,302)(H,255,280)(H,256,310)(H,267,268)(H,269,270)(H,271,272)(H4,201,202,212)(H4,203,204,213)(H4,205,206,214)(H4,207,208,215)(H4,209,210,216);(H,6,7)/t96-,97-,98-,99-,100-,101-,102-,103-,104-,105-,106-,107+,108+,110-,111-,112-,113-,114-,115-,116-,117-,118-,119-,120-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,142-,143-,144-,145-,146-,147-,148-,149-,150-;/m0./s1
InChI Key
HZIVAMJUHUOKBO-HOTOWTTASA-N

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