L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is a naturally derived, non-proteinogenic amino acid analogue featuring a tetrahydro-β-carboline (norharmane) ring system bearing a carboxylic acid at the 3-position and an amino acid-like backbone suitable for incorporation into peptide-related structures. The molecule contains a free carboxyl functional group and an amino-bearing heterocycle within the fused ring framework, with the "L-" stereochemical designation indicating a specific stereoisomer at the chiral center associated with the amino acid motif. In synthetic and chemical biology workflows, it is used as a structurally modified building block for preparing peptide analogues and for structure-activity or binding studies where a rigid, polycyclic side-chain scaffold is used to probe conformational effects.
CAT No: CP23802
CAS No:42438-90-4
Synonyms/Alias:42438-90-4;L-1,2,3,4-Tetrahydronorharman-3-carboxylicacid;CYCLOMETHYLTRYPTOPHAN;(S)-2,3,4,9-TETRAHYDRO-1H-PYRIDO[3,4-B]INDOLE-3-CARBOXYLICACID;(3S)-1H,2H,3H,4H,9H-pyrido[3,4-b]indole-3-carboxylicacid;Lycoperodine1;H-Tpi-OH;L-1,2,3,4-tetrahydronorharmane-3-carboxylicacid;AC1L9N4V;BIDD:GT0550;SCHEMBL416557;CHEMBL155546;CTK1D5641;ZINC37835;FSNCEEGOMTYXKY-JTQLQIEISA-N;MolPort-003-661-589;ALBB-014369;AKOS004907297;AKOS015856022;AL351-1;AJ-08771;PL001584;PL056548;SC-11204;AB0048811
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is a chiral, amino-acid-like heterocyclic carboxylic acid featuring a tetrahydro-β-carboline (norharmane-derived) fused-ring scaffold with a stereogenic center at the 3-position bearing a carboxylic acid functionality. The molecule combines a rigid polycyclic framework with an acidic group that can participate in salt formation, activation for coupling, and downstream derivatization to amides, esters, and mixed anhydrides. The heteroaromatic character and ring nitrogen(s) influence basicity, hydrogen-bonding, and chromatographic behavior, making the compound a useful stereodefined intermediate for constructing constrained bioactive-like motifs. The presence of a free carboxyl group enables direct compatibility with peptide coupling chemistry, while the heterocycle supports conversion into N- and C-functionalized analogs for SAR-oriented synthesis and biochemical probe development.
1. Peptide Coupling Building Block
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is used in peptide synthesis and constrained peptidomimetic construction where a carboxylic acid group enables activation for amide bond formation with protected amino groups. The rigid tetrahydro-β-carboline scaffold can be incorporated as a chiral residue to modulate backbone conformation and side-chain sterics in short peptides and cyclic analogs. Carboxyl activation strategies and subsequent amide formation allow systematic variation of neighboring residues while maintaining stereochemical integrity at the 3-position. Downstream, the resulting amide-linked products serve as research-grade peptide building blocks for structure-activity relationship studies and receptor-binding motif exploration in medicinal chemistry workflows.
2. Chiral Amino Acid Intermediate
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid functions as a chiral amino acid intermediate for stereoselective synthesis of nitrogen-containing heterocycle-containing analogs. The stereogenic carboxyl-bearing center supports enantiopure incorporation into larger frameworks, while the fused-ring system provides a defined three-dimensional shape that can be carried through to final targets. The free acid can be converted into protected derivatives such as esters or carboxyl-activated intermediates, enabling controlled coupling steps that preserve stereochemistry during multistep sequences. The heterocyclic nitrogen(s) also enable orthogonal functionalization routes after carboxyl derivatization, supporting efficient downstream synthesis of chiral libraries and stereochemically defined reference materials.
3. Chemical Biology Probe Synthesis
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is applicable to chemical biology research where heterocyclic amino-acid-like scaffolds are used to generate binding probes and conformationally constrained ligands. The carboxyl group provides a handle for attaching linkers, forming amide conjugates, or creating reporter-bearing derivatives without disrupting the core tetrahydro-β-carboline geometry. The fused polycyclic structure can participate in specific molecular recognition through aromatic/heteroaromatic interactions and defined hydrogen-bonding patterns, which is useful when designing probes for binding-site mapping or target engagement assays. Resulting conjugation-ready derivatives support downstream formation of fluorescent, affinity, or mass-tagged analogs for mechanistic studies and biomolecular interaction profiling.
4. SAR Peptidomimetic Libraries
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is suitable for SAR studies and peptidomimetic library synthesis that rely on chiral, carboxyl-functionalized residues to probe structure-function relationships. The stereodefined carboxylic acid enables systematic variation of coupling partners to generate series of amide-linked analogs, including C-terminal modifications and side-chain-like substitutions in peptide mimetics. The rigid tetrahydro-β-carboline framework can help differentiate compounds by conformational restriction, supporting comparative evaluation across closely related structures. Downstream, the compound can be incorporated into larger scaffolds for fragment-to-lead exploration, enabling medicinal chemistry teams to generate stereochemically consistent analog sets for iterative design.
5. Process Chemistry Intermediate
L-1,2,3,4-tetrahydronorharmane-3-carboxylic acid is employed as a process chemistry intermediate for manufacturing routes that require a stable, isolable chiral carboxylic acid with a nitrogen-containing heterocycle. The free carboxyl group supports conversion into standard coupling forms such as esters or activated derivatives, allowing modular assembly of higher molecular weight intermediates under controlled conditions. The polycyclic scaffold's chemical robustness can facilitate scale-up-friendly handling during intermediate preparation, while its defined stereocenter supports consistent product profiles across batches. Industrially, the compound can be used to prepare downstream fine-chemical intermediates for heterocycle-containing amides and peptidomimetic building blocks used in specialty chemical production and advanced materials precursor synthesis.
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